PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID GSBRNA2T00068329001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family LBD
Protein Properties Length: 199aa    MW: 21401.4 Da    PI: 8.3568
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
GSBRNA2T00068329001genomeGenoscopeView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.29.1e-41201191100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                          +CaaCk+lrr+Ca++C+++pyf   +p kfa vhk+FGasnv+k+l ++pe +r da++slvyeA++r+rdPvyG++g i++lqqq++ l
  GSBRNA2T00068329001  20 PCAACKLLRRRCAQECPFSPYFSPYEPLKFASVHKVFGASNVSKMLMEVPEGQRADAANSLVYEANVRLRDPVYGCMGAISALQQQVQAL 109
                          7***************************************************************************************** PP

               DUF260  91 kaelallkee 100
                          +ael ++++e
  GSBRNA2T00068329001 110 QAELTAVRSE 119
                          *****99987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089125.21819120IPR004883Lateral organ boundaries, LOB
PfamPF031954.6E-4120117IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MAGIRRHISG PPGALNTITP CAACKLLRRR CAQECPFSPY FSPYEPLKFA SVHKVFGASN  60
VSKMLMEVPE GQRADAANSL VYEANVRLRD PVYGCMGAIS ALQQQVQALQ AELTAVRSEI  120
LKYKQREAVA TLIVPSNSQY HNSGGVSVIA LPPQTPSTPP QPTAAHPPPP PSSCVYSQPT  180
TRALEYGEIE SENNSYFG*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4738441e-163AB473844.1 Arabidopsis thaliana ASL11 mRNA for ASYMMETRIC LEAVES2-like 11 protein, complete cds.
GenBankBT0252881e-163BT025288.1 Arabidopsis thaliana At2g40470 mRNA, complete cds.
GenBankDQ4466131e-163DQ446613.1 Arabidopsis thaliana clone pENTR221-At2g40470 LOB domain protein 15/lateral organ boundaries domain protein 15 (At2g40470) mRNA, complete cds.
GenBankDQ6530511e-163DQ653051.1 Arabidopsis thaliana clone 0000012791_0000009246 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013752104.11e-144PREDICTED: LOB domain-containing protein 15-like
RefseqXP_009142693.11e-144PREDICTED: LOB domain-containing protein 15-like
SwissprotQ8L5T51e-103LBD15_ARATH; LOB domain-containing protein 15
TrEMBLM4CK381e-144M4CK38_BRARP; Uncharacterized protein
STRINGBra004572.1-P1e-144(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19272781
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40470.11e-95LOB domain-containing protein 15